[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 139 items for (author: morgan & do)

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-16512:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-16522:
Structure of ADDoCoV-ADAH11
Method: single particle / : Yadav KNS, Buzas D, Berger-Schaffitzel C, Berger I

PDB-8c9n:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-29700:
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29713:
KRAS G12C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29715:
KRAS G12C complex with GDP and AMG 510 imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29718:
Green Fluorescence Protein imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29719:
KRAS G12V complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29720:
KRAS G13C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g3k:
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g42:
KRAS G12C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g47:
KRAS G12C complex with GDP and AMG 510 imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4e:
Green Fluorescence Protein imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4f:
KRAS G12V complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4h:
KRAS G13C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-14504:
Three-dimensional structure of myosin binding protein C in rat cardiac muscle
Method: subtomogram averaging / : Luther PK, Morris EP, Huang X, Jun L

EMDB-26817:
A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA
Method: single particle / : Morgan CE, Yu EW

EMDB-26818:
A. baumannii ribosome: 70S with E-site tRNA
Method: single particle / : Morgan CE, Yu EW

EMDB-26819:
A. baumannii 70S ribosome-Streptothricin-F complex
Method: single particle / : Morgan CE, Yu EW

EMDB-26820:
A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA
Method: single particle / : Morgan CE, Yu EW

EMDB-26821:
A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA
Method: single particle / : Morgan CE, Yu EW

EMDB-26822:
A. baumannii 70S ribosome-Streptothricin-D complex
Method: single particle / : Morgan CE, Yu EW

PDB-7uvv:
A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA
Method: single particle / : Morgan CE, Yu EW

PDB-7uvw:
A. baumannii ribosome: 70S with E-site tRNA
Method: single particle / : Morgan CE, Yu EW

PDB-7uvx:
A. baumannii 70S ribosome-Streptothricin-F complex
Method: single particle / : Morgan CE, Yu EW

PDB-7uvy:
A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA
Method: single particle / : Morgan CE, Yu EW

PDB-7uvz:
A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA
Method: single particle / : Morgan CE, Yu EW

PDB-7uw1:
A. baumannii 70S ribosome-Streptothricin-D complex
Method: single particle / : Morgan CE, Yu EW

EMDB-28244:
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
Method: single particle / : Shen BW, Stoddard BL

EMDB-28248:
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
Method: single particle / : Shen BW, Stoddard BL

PDB-8emc:
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
Method: single particle / : Shen BW, Stoddard BL

PDB-8emh:
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
Method: single particle / : Shen BW, Stoddard BL

EMDB-27177:
sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein
Method: single particle / : Abernathy ME, Barnes CO

PDB-8d48:
sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein
Method: single particle / : Abernathy ME, Barnes CO

EMDB-25606:
Zika Virus particle bound with IgM antibody DH1017 Fab fragment
Method: single particle / : Miller AS, Kuhn RJ

PDB-7t17:
Zika Virus asymmetric unit bound with IgM antibody DH1017 Fab fragment
Method: single particle / : Miller AS, Kuhn RJ

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-12368:
CryoEM structure of the human Separase-Cdk1-cyclin B1-Cks1 complex
Method: single particle / : Yu J, Raia P, Ghent CM, Raisch T, Sadian Y, Barford D, Raunser S, Morgan DO, Boland A

EMDB-12369:
CryoEM structure of the human Separase-Securin complex
Method: single particle / : Yu J, Raia P, Ghent CM, Raisch T, Sadian Y, Barford D, Raunser S, Morgan DO, Boland A

EMDB-23521:
Prefusion RSV F glycoprotein bound by neutralizing site V-directed antibody ADI-14442
Method: single particle / : Gilman MSA, McLellan JS

PDB-7lue:
Prefusion RSV F glycoprotein bound by neutralizing site V-directed antibody ADI-14442
Method: single particle / : Gilman MSA, McLellan JS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more